bt.avigliano.2021.RdThe potential use of Sr/Ca and Ba/Ca ratios in fish otolith, as a complement to 87Sr/86Sr to study movements of Prochilodus lineatus, was evaluated in the La Plata Basin (South America). Water ratios were obtained from samples collected during the high and low water seasons at 42 sites across the La Plata Basin. Elemental and stable isotope in water were measured by MC-ICP-MS, ICP-MS and ion chromatography, and obtained from available literature.
bt.avigliano.2021The data frame 14,774 × 11 contains the following columns:
| fish_id | integer | fish identifier |
| distance | numeric | distance from the otolith core (um) |
| value | numeric | value of trace element or stable isotope (mmol/mol;‰) |
| element | character | Sr/Ca; 87Sr/86Sr |
| species | character | scientific name |
| site | character | site of capture |
| sector | character | sector(basin) of capture |
| locality | character | locality of capture |
| coordenate | character | coordenate of capture |
| date | integer | date of capture |
| standard_length | numeric | standard length (cm) |
This dataset contains otolith core-to-edge Sr/Ca and 87Sr/86Sr of Prochilodus lineatus, which were caught between February 2011 and November 2014 using trammel nets at six different sites: Río de la Plata Estuary, lower and middle Uruguay, middle and upper Paraná, and upper Bermejo rivers.
Instrument: LA-ICP-MS (laser ablation-inductively coupled plasma mass spectrometry);MC-ICP-MS (multicollector inductively coupled plasma mass spectrometer)
Beam diameter: 30um
Scan speed: 5um/s
Reference materials: NIST-610,NIST-612 (National Institutes of Standards and Technology glass standard) and NIESS-22 (National Institute of Japan Environmental Studies)
Avigliano, E. Pisonero, J. Bouchez, J. Pouilly, M. Domanico, A. Sanchez, S. . . & Volpedo, A. V. (2021). Otolith Sr/Ca ratio complements Sr isotopes to reveal fish migration in large basins with heterogeneous geochemical landscapes. Environmental Biology of Fishes, 104(3), 277-292. https://doi.org/10.1007/s10641-021-01074-y
Data are provided by Prof. Avigliano estebanavigliano@conicet.gov.ar.
Traversing the paper's information via Semantic Scholar ID 693837711747e2a52ca7e911983c2ffd22c47f25 using S2miner package
otolith, trace element,stable isotope, Sr/Ca, Sr8786
### copy data into 'dat'
dat <- bt.avigliano.2021
tibble::tibble(dat)
#> # A tibble: 14,774 × 11
#> fish_id distance value element species site sector locality coordenate date standard_length
#> <chr> <dbl> <dbl> <chr> <chr> <chr> <chr> <chr> <chr> <int> <chr>
#> 1 P48 0 0.844 Sr_Ca Prochilodus … Repr… Middl… Mocoreta -31.11490… 2011 53
#> 2 P48 4 1.03 Sr_Ca Prochilodus … Repr… Middl… Mocoreta -31.11490… 2011 53
#> 3 P48 8 0.969 Sr_Ca Prochilodus … Repr… Middl… Mocoreta -31.11490… 2011 53
#> 4 P48 12 1.24 Sr_Ca Prochilodus … Repr… Middl… Mocoreta -31.11490… 2011 53
#> 5 P48 16 0.966 Sr_Ca Prochilodus … Repr… Middl… Mocoreta -31.11490… 2011 53
#> 6 P48 20 1.02 Sr_Ca Prochilodus … Repr… Middl… Mocoreta -31.11490… 2011 53
#> 7 P48 24 1.13 Sr_Ca Prochilodus … Repr… Middl… Mocoreta -31.11490… 2011 53
#> 8 P48 28 0.991 Sr_Ca Prochilodus … Repr… Middl… Mocoreta -31.11490… 2011 53
#> 9 P48 32 1.10 Sr_Ca Prochilodus … Repr… Middl… Mocoreta -31.11490… 2011 53
#> 10 P48 36 0.916 Sr_Ca Prochilodus … Repr… Middl… Mocoreta -31.11490… 2011 53
#> # ℹ 14,764 more rows
if (FALSE) {
### load package
library(dplyr)
library(ggplot2)
### otolith sr/ca
ggplot(data = dat[which(dat$element == "Sr_Ca"),], aes(distance, value)) +
geom_line(aes(colour = site, group = fish_id), show.legend = F, na.rm = T) +
facet_grid(. ~ site, scales = "free_y") +
xlab("Distance from the otolith core (um)") +
ylab("otolith sr:ca (mmol/mol)") +
theme_bw() +
theme(
panel.grid.major = element_blank(), panel.grid.minor = element_blank(),
panel.background = element_blank(), axis.line = element_line(colour = "black"),
text = element_text(size = 10), legend.title = element_blank(),
plot.title = element_text(face = "bold")
)
### otolith sr8786
ggplot(data = dat[which(dat$element == "87Sr86Sr"),], aes(distance, value)) +
geom_line(aes(colour = site, group = fish_id), show.legend = F, na.rm = T) +
facet_grid(. ~ site) +
xlab("Distance from the otolith core (um)") +
ylab(expression(paste(
{}^"87",
"Sr/",
{}^"86",
"Sr"
))) +
theme_bw() +
theme(
panel.grid.major = element_blank(), panel.grid.minor = element_blank(),
panel.background = element_blank(), axis.line = element_line(colour = "black"),
text = element_text(size = 10), legend.title = element_blank(),
plot.title = element_text(face = "bold")
)
}